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Datasets.md

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Datasets:

UKBiobank's resources

UKBiobank TOPMed-imputed: 1400 EHR-derived broad PheWAS codes for 57 million TOPMed-imputed variants in 400,000 white British individuals.

UKBiobank HRC-imputed: 1400 EHR-derived broad PheWAS codes for 20 million imputed variants in 400,000 white British individuals.

UKBiobank Neale v1: 2400 traits for 11 million imputed variants in 337,000 unrelated white British individuals.

fastGWA | Yang Lab westlake:fastGWA to 2,173 traits on 456,422 array-genotyped and 49,960 whole-exome-sequenced individuals of European ancestry in the UK Biobank (UKB)

UKB (eurac.edu):EURAC, private research center located in Bolzano, Italy

ukbiobank: GRCh37,Oxford Brain Imaging Genetics Server - BIG40

POLMM PheWeb (leelabsg.org): UKB Lee Lab

Other biobanks

MGI BioVU Labs Meta: 70 meta-analyzed phenotypes for 800,000 variants.

FinMetSeq: 60 phenotypes for 400,000 variants in 8000-19,000 individuals.

KoGES PheWeb (leelabsg.org): 76 phenotypes from KoGES (National Biobank of Korea); meta-analysis for 32 phenotypes with Biobank Japan (BBJ); survival analysis for 14 phenotypes using SPACox; association analysis for 10 phenotypes with family history using TAPE PheWeb.jp: 260,000 participants, mainly of Japanese ancestry, 27,211,524 variants Nationwide genomic biobank in Mexico:unravels demographic history and complex trait architecture from 6,057 individuals: GWAS summary statistics

Uganda Genome Resource: GWAS Catalog (ebi.ac.uk) GCST009032-GCST009065

BioBank Russia:Complex Trait Susceptibilities and Ethnical Diversity in a Sample of 4,145 Russians

Metabolomics Portal PheWeb: Baker Institue Lipidomic GWAS Catalog (study accession numbers GCST90023981-GCST90025848)

Alcohol and Nicotine: GWAS meta-analysis of tobacco and alcohol use

Private Datasets:

MGI freeze3: 1546 EHR-derived broad PheWAS codes for 51.8 million imputed variants in 51,583 EUR-ancestry. tested can use, cannot downloaded, view, register needed(google account ok) Taiwan BioBank: 128,775 participants,view, download application needed, view

**FinnGen results **: FinnGen study from 3,095 endpoints of data freeze 7 (spring 2021), consisting of 309,154 individuals, view

Global Biobank Meta-analysis Initiative:results are from 14 endpoints of data freeze 1 (autumn 2021), consisting of 18 biobanks, view

UCLA ATLAS:UCLA ATLAS Community Health Initiative aims to genotype 150,000 participants, view

**AstraZeneca PheWAS Portal **: using exomes released by UK Biobank

below cannot used:

HUNT tested cannot use

SardiNIA tested cannot use

CKB PheWeb (ckbiobank.org):tested cannot use(under maintenance)

CARTaGENE PheWeb: Canada-wide "Canadian Partnership for Tomorrow's Health",tested cannot use

PheWeb source code:

PheWeb on github

Reference