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A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV

bioinf.shenwei.me/taxonkit

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A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV

bioinf.shenwei.me/taxonkit

Topics

bioinformatics cross-platform taxonomy taxid lca lineage taxdump taxonkit

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License

MIT license
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428 stars

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TaxonKit v0.20.0 Latest
Apr 29, 2025
+ 50 releases

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