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ImportError: cannot import name '_compute_connectivities_umap' from 'scanpy.neighbors' #135
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hi, got the same error since updating scanpy in the last 12 hours |
hello, yes same dependencies, same problem |
Same here, it seems like the last version of Scanpy compatible with muon is v1.9.8. |
seems like I'm two weeks late, but still with the same issue. |
same errors with scanpy 1.10.1, muon 0.1.5, anndata 0.10.6 , |
Oh, I think we still need a patch release @gtca? |
@grst, the @zijunmeng, can you check that it fixed the issue for you? |
Sorry, got confused by that release missing on github. But I've seen it's there now :) |
yes, thank you, i have solved this problem. In my env, I have installed scvi, scglue, and muon. Two days ago, I encountered conflicts between muon's functions and scvi. I have now uninstalled the original 0.1.5 version and reinstalled the 0.1.6 version using pip. The conflicts have indeed disappeared. Thank you again for your help. |
Python 3.9.18 | packaged by conda-forge | (main, Dec 23 2023, 16:36:46)
[Clang 16.0.6 ] on darwin
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I installed muon and tried to run one of the tutorial and got the following error, please help
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