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Updating spatstat seems to have misplaced "markvario", resulting in the following error when trying to attach Seurat:
library(Seurat) Error: package or namespace load failed for ‘Seurat’: object ‘markvario’ is not exported by 'namespace:spatstat'
R version 4.0.3 (2020-10-10) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Ubuntu 18.04.5 LTS Matrix products: default BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.7.1 LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.7.1 locale: [1] LC_CTYPE=en_CA.UTF-8 LC_NUMERIC=C LC_TIME=en_CA.UTF-8 LC_COLLATE=en_CA.UTF-8 LC_MONETARY=en_CA.UTF-8 [6] LC_MESSAGES=en_CA.UTF-8 LC_PAPER=en_CA.UTF-8 LC_NAME=C LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_CA.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices utils datasets methods base loaded via a namespace (and not attached): [1] nlme_3.1-152 spatstat.sparse_2.0-0 matrixStats_0.58.0 RcppAnnoy_0.0.18 RColorBrewer_1.1-2 [6] httr_1.4.2 sctransform_0.3.2 tools_4.0.3 utf8_1.2.1 R6_2.5.0 [11] irlba_2.3.3 rpart_4.1-15 KernSmooth_2.23-18 mgcv_1.8-34 DBI_1.1.1 [16] lazyeval_0.2.2 colorspace_2.0-0 withr_2.4.1 tidyselect_1.1.0 gridExtra_2.3 [21] compiler_4.0.3 cli_2.3.1 plotly_4.9.3 scales_1.1.1 lmtest_0.9-38 [26] spatstat.data_2.0-0 ggridges_0.5.3 pbapply_1.4-3 goftest_1.2-2 spatstat_2.0-1 [31] stringr_1.4.0 digest_0.6.27 spatstat.utils_2.1-0 rmarkdown_2.7 pkgconfig_2.0.3 [36] htmltools_0.5.1.1 sessioninfo_1.1.1 parallelly_1.24.0 fastmap_1.1.0 htmlwidgets_1.5.3 [41] rlang_0.4.10 shiny_1.6.0 generics_0.1.0 zoo_1.8-9 jsonlite_1.7.2 [46] ica_1.0-2 dplyr_1.0.5 magrittr_2.0.1 spatstat.linnet_1.65-3 patchwork_1.1.1 [51] Matrix_1.3-2 Rcpp_1.0.6 munsell_0.5.0 fansi_0.4.2 abind_1.4-5 [56] reticulate_1.18 lifecycle_1.0.0 stringi_1.5.3 yaml_2.2.1 MASS_7.3-53.1 [61] Rtsne_0.15 plyr_1.8.6 grid_4.0.3 parallel_4.0.3 listenv_0.8.0 [66] promises_1.2.0.1 ggrepel_0.9.1 crayon_1.4.1 deldir_0.2-10 miniUI_0.1.1.1 [71] lattice_0.20-41 cowplot_1.1.1 splines_4.0.3 tensor_1.5 knitr_1.31 [76] pillar_1.5.1 igraph_1.2.6 spatstat.geom_1.65-5 future.apply_1.7.0 reshape2_1.4.4 [81] codetools_0.2-18 leiden_0.3.7 glue_1.4.2 evaluate_0.14 SeuratObject_4.0.0 [86] data.table_1.14.0 vctrs_0.3.6 png_0.1-7 httpuv_1.5.5 spatstat.core_1.65-5 [91] polyclip_1.10-0 gtable_0.3.0 RANN_2.6.1 purrr_0.3.4 tidyr_1.1.3 [96] scattermore_0.7 future_1.21.0 assertthat_0.2.1 ggplot2_3.3.3 xfun_0.22 [101] mime_0.10 xtable_1.8-4 later_1.1.0.1 survival_3.2-10 viridisLite_0.3.0 [106] tibble_3.1.0 cluster_2.1.1 globals_0.14.0 fitdistrplus_1.1-3 ellipsis_0.3.1 [111] ROCR_1.0-11
The text was updated successfully, but these errors were encountered:
https://github.com/spatstat/spatstat Looks like markvario is now in spatstat.core (https://www.rdocumentation.org/packages/spatstat.core/versions/1.65-5/topics/markvario)
Sorry, something went wrong.
See #4226 (comment)
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Updating spatstat seems to have misplaced "markvario", resulting in the following error when trying to attach Seurat:
The text was updated successfully, but these errors were encountered: