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spatstat::markvario moved to spatstat.core in latest spatstat release #4222

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bbimber opened this issue Mar 14, 2021 · 1 comment
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spatstat::markvario moved to spatstat.core in latest spatstat release #4222

bbimber opened this issue Mar 14, 2021 · 1 comment
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@bbimber
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bbimber commented Mar 14, 2021

Hello,

Seurat depends on spatstat, including markvario(). spatstat just pushed a new release to cran (2.0-1). In spatstat 1.64-2, markvario is exported. In 2.0-1, markvario() is moved to spatstat.core. Would you consider updating seurat's DESCRIPTION to peg a specific spatstat version, or updating to 2.0-1?

While existing R enlistments are fine, if anyone updates packages there's nothing to indicate in the code that Seurat 4 is incompatible with the latest spatstat. We noticed this b/c our github actions testing broke, which pulls the latest versions of packages.

Thanks
@bbimber bbimber added the bug Something isn't working label Mar 14, 2021
@zijianni zijianni mentioned this issue Mar 15, 2021
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@andrewwbutler
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Hi,

Thanks for reporting. Going to close this issue just to consolidate responses in #4226.

We are aware of this issue and working on submitting a fix to CRAN. In the meantime, this issue has been resolved on the develop branch of Seurat. To install the development version of Seurat, please see the instructions here.

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@andrewwbutler @bbimber