https://phenome.jax.org/projects/Recla1

Founder genotypes from ftp://ftp.jax.org/MUGA/

Additional phenotypes at https://phenome.jax.org/projects/Chesler4 (in particular, http://phenomedoc.jax.org/MPD_projdatasets/Chesler4.csv)

• recla.json - Control file in JSON format
• recla_covar.csv - covariate data (individuals x covariates)
• recla_pheno.csv - phenotype data (individuals x phenotypes)
• recla_geno.csv - genotype data (markers x individuals)
• do_foundergeno.csv - founder genotype data (markers x founders)
• recla_gmap.csv - Genetic map of markers (positions in cM)
• recla_pmap.csv - Physical map of markers (positions in NCBI38/mm10 Mbp)

The data are also available as a zip file, recla.zip.

See the R/qtl2 input file format.

Recla JM, Robledo RF, Gatti DM, Bult CJ, Churchill GA, Chesler EJ (2014) Precise genetic mapping and integrative bioinformatics in Diversity Outbred mice reveals Hydin as a novel pain gene. Mamm Genome 25:211-222

Logan RW, Robledo RF, Recla JM, Philip VM, Bubier JA, Jay JJ, Harwood C, Wilcox T, Gatti DM, Bult CJ, Churchill GA, Chesler EJ (2013) High-precision genetic mapping of behavioral traits in the diversity outbred mouse population. Genes Brain Behav 12:424-437

Load these data into R directly from the web as follows:

library(qtl2)
file <- paste0("https://raw.githubusercontent.com/rqtl/",
               "qtl2data/main/DO_Recla/recla.zip")
recla <- read_cross2(file)