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Compiler error /cuda/setup.py in MacOS #30

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oiwio opened this issue Mar 10, 2019 · 2 comments
Closed

Compiler error /cuda/setup.py in MacOS #30

oiwio opened this issue Mar 10, 2019 · 2 comments

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@oiwio
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oiwio commented Mar 10, 2019

Hello, I want to use PyTorch Geometric but "pip install --upgrade torch-scatter" failed, then I want to try to build extension-cpp, but still failed, the following is the information of my system and log

System

  • OS: MacOS 10.13.6
  • PyTorch version: 1.1.0
  • How you installed PyTorch (conda, pip, source): source
  • Python version: Anaconda python 3.6.4
  • CUDA/cuDNN version: CUDA 10.1
  • GPU models and configuration: GeForce GTX 1080
  • GCC version (if compiling from source): gcc version 8.3.0 (Homebrew GCC 8.3.0)

Log

running install
running bdist_egg
running egg_info
creating lltm_cuda.egg-info
writing lltm_cuda.egg-info/PKG-INFO
writing dependency_links to lltm_cuda.egg-info/dependency_links.txt
writing top-level names to lltm_cuda.egg-info/top_level.txt
writing manifest file 'lltm_cuda.egg-info/SOURCES.txt'
reading manifest file 'lltm_cuda.egg-info/SOURCES.txt'
writing manifest file 'lltm_cuda.egg-info/SOURCES.txt'
installing library code to build/bdist.macosx-10.7-x86_64/egg
running install_lib
running build_ext
building 'lltm_cuda' extension
creating build
creating build/temp.macosx-10.7-x86_64-3.6
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/kiwee/anaconda3/include -arch x86_64 -I/Users/kiwee/anaconda3/include -arch x86_64 -I/Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include -I/Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/torch/csrc/api/include -I/Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/TH -I/Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/THC -I/usr/local/cuda/include -I/Users/kiwee/anaconda3/include/python3.6m -c lltm_cuda.cpp -o build/temp.macosx-10.7-x86_64-3.6/lltm_cuda.o -DTORCH_API_INCLUDE_EXTENSION_H -DTORCH_EXTENSION_NAME=lltm_cuda -std=c++11
In file included from lltm_cuda.cpp:1:
In file included from /Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/torch/csrc/api/include/torch/torch.h:3:
In file included from /Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/torch/csrc/api/include/torch/all.h:4:
In file included from /Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/torch/csrc/api/include/torch/data.h:3:
In file included from /Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/torch/csrc/api/include/torch/data/dataloader.h:3:
In file included from /Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/torch/csrc/api/include/torch/data/dataloader/stateful.h:3:
In file included from /Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/torch/csrc/api/include/torch/data/dataloader/base.h:3:
In file included from /Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/torch/csrc/api/include/torch/data/dataloader_options.h:4:
In file included from /Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/torch/csrc/api/include/torch/types.h:3:
In file included from /Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/ATen/ATen.h:3:
In file included from /Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/c10/core/Allocator.h:6:
In file included from /Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/c10/core/Device.h:3:
/Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/c10/core/DeviceType.h:48:20: error: explicit specialization of
non-template struct 'hash'
template <> struct hashc10::DeviceType {
^ ~~~~~~~~~~~~~~~~~
/Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/c10/core/DeviceType.h:50:21: error: expected '(' for
function-style cast or type construction
return std::hash()(static_cast(k));
~~~~~~~~~^
/Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/c10/core/DeviceType.h:50:25: error: expected '(' for
function-style cast or type construction
return std::hash()(static_cast(k));
~~~^
/Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/c10/core/DeviceType.h:50:27: error: expected expression
return std::hash()(static_cast(k));
^
In file included from lltm_cuda.cpp:1:
In file included from /Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/torch/csrc/api/include/torch/torch.h:3:
In file included from /Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/torch/csrc/api/include/torch/all.h:4:
In file included from /Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/torch/csrc/api/include/torch/data.h:3:
In file included from /Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/torch/csrc/api/include/torch/data/dataloader.h:3:
In file included from /Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/torch/csrc/api/include/torch/data/dataloader/stateful.h:3:
In file included from /Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/torch/csrc/api/include/torch/data/dataloader/base.h:3:
In file included from /Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/torch/csrc/api/include/torch/data/dataloader_options.h:4:
In file included from /Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/torch/csrc/api/include/torch/types.h:3:
In file included from /Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/ATen/ATen.h:3:
In file included from /Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/c10/core/Allocator.h:6:
In file included from /Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/c10/core/Device.h:5:
In file included from /Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/c10/util/Exception.h:5:
In file included from /Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/c10/util/StringUtil.h:5:
/Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/c10/util/string_utils.h:52:12: error: no member named 'stod' in
namespace 'std'
using std::stod;
~~~~~^
/Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/c10/util/string_utils.h:53:12: error: no member named 'stoi' in
namespace 'std'; did you mean 'atoi'?
using std::stoi;
~~~~~^~~~
atoi
/usr/include/c++/4.2.1/cstdlib:113:11: note: 'atoi' declared here
using ::atoi;
^
In file included from lltm_cuda.cpp:1:
In file included from /Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/torch/csrc/api/include/torch/torch.h:3:
In file included from /Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/torch/csrc/api/include/torch/all.h:4:
In file included from /Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/torch/csrc/api/include/torch/data.h:3:
In file included from /Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/torch/csrc/api/include/torch/data/dataloader.h:3:
In file included from /Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/torch/csrc/api/include/torch/data/dataloader/stateful.h:3:
In file included from /Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/torch/csrc/api/include/torch/data/dataloader/base.h:3:
In file included from /Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/torch/csrc/api/include/torch/data/dataloader_options.h:4:
In file included from /Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/torch/csrc/api/include/torch/types.h:3:
In file included from /Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/ATen/ATen.h:3:
In file included from /Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/c10/core/Allocator.h:6:
In file included from /Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/c10/core/Device.h:5:
In file included from /Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/c10/util/Exception.h:5:
In file included from /Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/c10/util/StringUtil.h:5:
/Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/c10/util/string_utils.h:54:12: error: no member named 'stoull'
in namespace 'std'
using std::stoull;
~~~~~^
/Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/c10/util/string_utils.h:55:12: error: no member named
'to_string' in namespace 'std'
using std::to_string;
~~~~~^
In file included from lltm_cuda.cpp:1:
In file included from /Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/torch/csrc/api/include/torch/torch.h:3:
In file included from /Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/torch/csrc/api/include/torch/all.h:4:
In file included from /Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/torch/csrc/api/include/torch/data.h:3:
In file included from /Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/torch/csrc/api/include/torch/data/dataloader.h:3:
In file included from /Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/torch/csrc/api/include/torch/data/dataloader/stateful.h:3:
In file included from /Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/torch/csrc/api/include/torch/data/dataloader/base.h:3:
In file included from /Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/torch/csrc/api/include/torch/data/dataloader_options.h:4:
In file included from /Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/torch/csrc/api/include/torch/types.h:3:
In file included from /Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/ATen/ATen.h:3:
In file included from /Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/c10/core/Allocator.h:6:
/Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/c10/core/Device.h:103:8: error: explicit specialization of
non-template struct 'hash'
struct hashc10::Device {
^ ~~~~~~~~~~~~~
/Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/c10/core/Device.h:103:8: error: redefinition of 'hash'
/Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/c10/core/DeviceType.h:48:20: note: previous definition is here
template <> struct hashc10::DeviceType {
^
In file included from lltm_cuda.cpp:1:
In file included from /Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/torch/csrc/api/include/torch/torch.h:3:
In file included from /Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/torch/csrc/api/include/torch/all.h:4:
In file included from /Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/torch/csrc/api/include/torch/data.h:3:
In file included from /Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/torch/csrc/api/include/torch/data/dataloader.h:3:
In file included from /Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/torch/csrc/api/include/torch/data/dataloader/stateful.h:3:
In file included from /Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/torch/csrc/api/include/torch/data/dataloader/base.h:3:
In file included from /Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/torch/csrc/api/include/torch/data/dataloader_options.h:4:
In file included from /Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/torch/csrc/api/include/torch/types.h:3:
In file included from /Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/ATen/ATen.h:3:
In file included from /Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/c10/core/Allocator.h:7:
/Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/c10/util/UniqueVoidPtr.h:42:8: error: no template named
'unique_ptr' in namespace 'std'
std::unique_ptr<void, DeleterFnPtr> ctx_;

/Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/c10/util/UniqueVoidPtr.h:66:8: error: no template named
    'unique_ptr' in namespace 'std'
std::unique_ptr<void, DeleterFnPtr>&& move_context() {
~~~~~^
/Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/c10/util/UniqueVoidPtr.h:67:17: error: no member named 'move'
    in namespace 'std'
  return std::move(ctx_);
         ~~~~~^
/Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/c10/util/UniqueVoidPtr.h:71:17: error: no member named
    'unique_ptr' in namespace 'std'
  ctx_ = std::unique_ptr<void, DeleterFnPtr>(ctx_.release(), new_deleter);
         ~~~~~^
/Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/c10/util/UniqueVoidPtr.h:71:32: error: expected '(' for
    function-style cast or type construction
  ctx_ = std::unique_ptr<void, DeleterFnPtr>(ctx_.release(), new_deleter);
                         ~~~~^
/Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/c10/util/UniqueVoidPtr.h:107:54: error: no type named
    'nullptr_t' in namespace 'std'
inline bool operator==(const UniqueVoidPtr& sp, std::nullptr_t) noexcept {
                                              ~~~~~^
/Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/c10/util/UniqueVoidPtr.h:110:29: error: no type named
    'nullptr_t' in namespace 'std'
inline bool operator==(std::nullptr_t, const UniqueVoidPtr& sp) noexcept {
                     ~~~~~^
/Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/c10/util/UniqueVoidPtr.h:113:54: error: no type named
    'nullptr_t' in namespace 'std'
inline bool operator!=(const UniqueVoidPtr& sp, std::nullptr_t) noexcept {
                                              ~~~~~^
/Users/kiwee/anaconda3/lib/python3.6/site-packages/torch/include/c10/util/UniqueVoidPtr.h:116:29: error: no type named
    'nullptr_t' in namespace 'std'
inline bool operator!=(std::nullptr_t, const UniqueVoidPtr& sp) noexcept {
                     ~~~~~^
fatal error: too many errors emitted, stopping now [-ferror-limit=]
20 errors generated.
error: command 'gcc' failed with exit status 1
@soumith
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soumith commented Mar 10, 2019

before you build the extension, run export MACOSX_DEPLOYMENT_TARGET=10.11.
Then go ahead and build the extension.

This is a weird thing you have to do specially for Anaconda python on OSX

@mohithraj
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@soumith Thanks, I was able to compile after setting export MACOSX_DEPLOYMENT_TARGET=10.11

@soumith soumith closed this as completed May 28, 2019
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@soumith @oiwio @mohithraj