These tutorials were developed by Matteo Fumagalli, Arne Jacobs, Nicolas Lou, and Nina Overgaard Therkildsen. An earlier version was used in the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 19-22 2020

• Tutorial 1: Data processing

• Tutorial 2: Genotype and SNP calling

• Tutorial 3a: Linkage disequilibrium

• Tutorial 3b: Population structure

• Tutorial 4: Summary statistics

Acknowledgements: This course material was developed with support from an NSF grant to NOT (OCE‐1756316).

Other resources:

Please check out our beginner's guide to low-coverage whole genome sequencing.

We also maintain two GitHub repos that host a collection of scripts for the efficient high-throughput processing and analysis of lcWGS data.