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ilisulh opened this issue Jan 25, 2021 · 5 comments
Closed

vdb-confiq: command not found #461

ilisulh opened this issue Jan 25, 2021 · 5 comments

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@ilisulh
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ilisulh commented Jan 25, 2021

I got the error "This sra toolkit installation has not been configured.
Before continuing, please run: vdb-config --interactive"
After running the command, I got the error "-bash: vdb-config: command not found".
How to fix this? I look at previous post about this, and to fix it I need to change the permission for SRA tool kit to allow read and write, however I don't know how to do this.

@ilisulh ilisulh changed the title vdv-confiq: command not found vdb-confiq: command not found Jan 25, 2021
@gubrins
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gubrins commented Jan 25, 2021

Heys @ilisulh ,
I imagine you don't have the function into the path. Try to run the command like this ./vdb-config when you are inside the folder containing that function.
If this works, you should see an interactive blue terminal. If you are running in mac catalina, when you try to save the new options, you will get the message "error saving changes". I'm in that step, let's see if we can fix it!

@klymenko
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klymenko commented Jan 25, 2021

@ilisulh, which command did you run when you received This sra toolkit installation has not been configured.?

All sra-tools binaries are located in the same directory.
To get a valid sra-toolkit - download and unpack a tarball from https://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=software.

@klymenko
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klymenko commented Feb 3, 2021

@ilisulh, do you still need help?
vdb-confiq is not a valid name.

@klymenko klymenko closed this as completed Feb 9, 2021
@tiandachen
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you need to run the command,"./vdb-config --interactive" but not "vdb-config --interactive"

@Mallikarjun-s-beelagi
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make sure that path contains your particular function. then write ./vdb-config --interactive. this will popup a dialogue box where you can enable the access.

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