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@nanoporetech

Oxford Nanopore Technologies

Direct DNA/RNA analysis for anyone, anywhere.

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  1. dorado Public

    Oxford Nanopore's Basecaller

    C++ 690 88

  2. remora Public

    Methylation/modified base calling separated from basecalling.

    Python 177 23

  3. medaka Public

    Sequence correction provided by ONT Research

    Python 465 82

  4. pod5-file-format Public

    Pod5: a high performance file format for nanopore reads.

    C++ 152 21

  5. fast-ctc-decode Public

    Blitzing Fast CTC Beam Search Decoder

    Rust 183 27

  6. bonito Public

    A PyTorch Basecaller for Oxford Nanopore Reads

    Python 421 127

Repositories

Showing 10 of 92 repositories
  • dorado-docs Public

    Dorado Documentation

    Python 6 1 0 0 Updated Jul 9, 2025
  • modkit Public

    A bioinformatics tool for working with modified bases

    Rust 203 15 193 (1 issue needs help) 0 Updated Jun 25, 2025
  • hatch-protobuf Public

    Hatch plugin for generating Python files from Protocol Buffers .proto files

    Python 8 3 1 0 Updated Jun 24, 2025
  • bonito Public

    A PyTorch Basecaller for Oxford Nanopore Reads

    Python 421 127 6 3 Updated Jun 18, 2025
  • dorado Public

    Oxford Nanopore's Basecaller

    C++ 690 88 96 (1 issue needs help) 4 Updated Jun 11, 2025
  • ont-output-specifications Public

    Specifications for output files from MinKNOW, dorado and others

    Python 0 0 0 0 Updated Jun 5, 2025
  • medaka Public

    Sequence correction provided by ONT Research

    Python 465 82 26 1 Updated May 23, 2025
  • pomfret Public
    C 20 0 0 0 Updated May 21, 2025
  • rerio Public

    Research release basecalling models and configurations

    Python 114 11 4 1 Updated May 21, 2025
  • pod5-file-format Public

    Pod5: a high performance file format for nanopore reads.

    C++ 152 21 36 3 Updated May 20, 2025