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CHIPseq

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jmzeng1314

add header for bash script

Aug 13, 2016

d37757c · Aug 13, 2016

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CHIPseq

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Name		Name	Last commit message	Last commit date
parent directory ..
step0-install.sh		step0-install.sh	add header for bash script	Aug 13, 2016
step1-download-SRA-data-and-change-to-fastq-files.sh		step1-download-SRA-data-and-change-to-fastq-files.sh	add Chip-seq data analysis pipeline	Aug 1, 2016
step2-QC-fastx-and-fastqc.sh		step2-QC-fastx-and-fastqc.sh	add Chip-seq data analysis pipeline	Aug 1, 2016
step3-alignment-to-reference-by-bowtie2.sh		step3-alignment-to-reference-by-bowtie2.sh	add RNAseq pipeline	Aug 13, 2016
step4-peaks-calling-by-macs2-peakranger.sh		step4-peaks-calling-by-macs2-peakranger.sh	add Chip-seq data analysis pipeline	Aug 1, 2016
step5-peaks-view-alignment-bed.R		step5-peaks-view-alignment-bed.R	add Chip-seq data analysis pipeline	Aug 1, 2016
step5-peaks-view-bedGraph.R		step5-peaks-view-bedGraph.R	add Chip-seq data analysis pipeline	Aug 1, 2016
step5-peaks-view-samtools-depth.R		step5-peaks-view-samtools-depth.R	add Chip-seq data analysis pipeline	Aug 1, 2016
step5-peaksView.sh.sh		step5-peaksView.sh.sh	add RNAseq pipeline	Aug 13, 2016
step6-CEAS.sh		step6-CEAS.sh	add RNAseq pipeline	Aug 13, 2016
step6-ChIPpeakAnno-1.R		step6-ChIPpeakAnno-1.R	add Chip-seq data analysis pipeline	Aug 1, 2016
step6-ChIPpeakAnno-EnsDb.R		step6-ChIPpeakAnno-EnsDb.R	add Chip-seq data analysis pipeline	Aug 1, 2016
step6-ChIPpeakAnno-UCSCdb.R		step6-ChIPpeakAnno-UCSCdb.R	add Chip-seq data analysis pipeline	Aug 1, 2016
step6-ChIPpeakAnno-Venn.R		step6-ChIPpeakAnno-Venn.R	add RNAseq pipeline	Aug 13, 2016
step6-ChIPpeakAnno-genomic-greatures.R		step6-ChIPpeakAnno-genomic-greatures.R	add Chip-seq data analysis pipeline	Aug 1, 2016
step6-ChIPseeker-1.R		step6-ChIPseeker-1.R	add RNAseq pipeline	Aug 13, 2016
step6-bam-bed2bedGraph.sh		step6-bam-bed2bedGraph.sh	add RNAseq pipeline	Aug 13, 2016
step6-bam2wig.sh		step6-bam2wig.sh	add Chip-seq data analysis pipeline	Aug 1, 2016
step7-peaks-bed2fasta.sh		step7-peaks-bed2fasta.sh	add RNAseq pipeline	Aug 13, 2016
step7-peaks2sequence.R		step7-peaks2sequence.R	add RNAseq pipeline	Aug 13, 2016
step8-Homer-findMotif.sh		step8-Homer-findMotif.sh	add RNAseq pipeline	Aug 13, 2016
step8-MIMEsuite-findMotif.sh		step8-MIMEsuite-findMotif.sh	add RNAseq pipeline	Aug 13, 2016
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