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convert_zero_one_based

Python CLI to convert between zero and one based coordinate systems

Installation

Install Anaconda

  1. You can find an installer to Anaconda here for your distribution (macOS, Linux, windows).
  2. Download the installer and follow the instructions.

Install from bioconda (easiest)

  1. Add the bioconda channel

     conda config --add channels defaults
     conda config --add channels conda-forge
     conda config --add channels bioconda
    
  2. Install

     conda install convert_zero_one_based
    
  3. Verify the install

     convert_zero_one_based --help
    

Build from source

  1. Clone this repo

     git clone https://github.com/griffithlab/convert_zero_one_based.git
    
  2. Add conda-forge channel to build dependencies

     conda config --add channels conda-forge 
    
  3. Use Anaconda to build the tool

     cd convert_zero_one_based
     conda build meta.yaml
    
  4. Install the tool locally

     conda install convert_zero_one_based --use-local
    
  5. Verify the install

     convert_zero_one_based --help
    

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Python CLI to convert between zero and one based genomic coordinate systems

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