Skip to content
@epi2me-labs

EPI2ME Labs

Bioinformatics resources from Oxford Nanopore Technologies Plc

Pinned Loading

  1. kraken2-server Public

    Kraken2 Server

    C++ 21 4

  2. wf-transcriptomes Public

    Nextflow 91 38

  3. wf-single-cell Public

    Python 86 43

  4. wf-bacterial-genomes Public

    Small variant calling for haploid samples

    Python 34 19

  5. wf-human-variation Public

    Nextflow 121 60

  6. fastcat Public

    Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.

    C 37 4

Repositories

Showing 10 of 35 repositories
  • wf-template Public

    Nextflow workflow template repository

    Python 18 33 1 0 Updated Apr 30, 2025
  • wf-mpx Public
    Nextflow 5 6 1 0 Updated Apr 29, 2025
  • wf-bacterial-genomes Public

    Small variant calling for haploid samples

    Python 34 19 10 1 Updated Apr 28, 2025
  • epi2me-docs Public
    HTML 0 0 0 0 Updated Apr 25, 2025
  • wf-artic Public

    ARTIC SARS-CoV-2 workflow and reporting

    Nextflow 50 35 11 0 Updated Apr 25, 2025
  • wf-tb-amr Public
    Python 4 1 1 0 Updated Apr 24, 2025
  • wf-cas9 Public
    Nextflow 6 2 2 0 Updated Apr 24, 2025
  • ezcharts Public
    Python 19 0 0 0 Updated Apr 24, 2025
  • epi2me-labs.github.io Public
    HTML 8 2 0 0 Updated Apr 16, 2025
  • wf-single-cell Public
    Python 86 43 14 0 Updated Apr 16, 2025
View all repositories