Files

 master

/

notebooks

/

Copy path

Directory actions

More options

Directory actions

More options

Latest commit

ghuls

Fix link to Cell Journal article Excell file to use the original URL.

Apr 8, 2024

d2309fe · Apr 8, 2024

History

History

/

notebooks

/

Top

Folders and files

Name		Name	Last commit message	Last commit date
parent directory ..
data		data	Data for running example notebook.	Dec 18, 2018
pySCENIC - AUCell example.ipynb		pySCENIC - AUCell example.ipynb	Updated example notebooks to latest version of API.	May 2, 2018
pySCENIC - Assess AUCell implementation.ipynb		pySCENIC - Assess AUCell implementation.ipynb	AUCell: test implementation.	Mar 22, 2018
pySCENIC - Benchmarking of different implementations for pruning.ipynb		pySCENIC - Benchmarking of different implementations for pruning.ipynb	Make pruning notebook openable again.	Feb 4, 2024
pySCENIC - Comparison to R implementation of the pipeline.ipynb		pySCENIC - Comparison to R implementation of the pipeline.ipynb	Fix database names in notebooks, documentation and tests.	Jul 9, 2019
pySCENIC - Conversion to feather of gene-based dm6 database.ipynb		pySCENIC - Conversion to feather of gene-based dm6 database.ipynb	Remove feather-format dependency.	Nov 5, 2018
pySCENIC - Create loom file.ipynb		pySCENIC - Create loom file.ipynb	Changed notebook that instructs on how to create a loom file to make …	Dec 18, 2018
pySCENIC - Full pipeline.ipynb		pySCENIC - Full pipeline.ipynb	Update Feather database file names to Feather v2 versions.	Aug 16, 2022
pySCENIC - Integration with scanpy.ipynb		pySCENIC - Integration with scanpy.ipynb	Fix link to Cell Journal article Excell file to use the original URL.	Apr 8, 2024
pySCENIC - List of Transcription Factors.ipynb		pySCENIC - List of Transcription Factors.ipynb	List of TFs	Jun 14, 2019
pySCENIC - Percentiles as threshold for modules.ipynb		pySCENIC - Percentiles as threshold for modules.ipynb	Change some missed "arboretum" to "arboreto" renamings.	Nov 5, 2018
pySCENIC - Preliminary - Known TFs for Mus musculus as MGI symbols.ipynb		pySCENIC - Preliminary - Known TFs for Mus musculus as MGI symbols.ipynb	Notebooks documenting the SCENIC pipeline.	Jan 31, 2018
pySCENIC - Test new module creation defaults.ipynb		pySCENIC - Test new module creation defaults.ipynb	modules_from_adjacencies: by default keep only modules in which the e…	Jul 12, 2018
View all files