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hi~ I had got a problem. It feels like there are something wrong with the database. I had downloaded the database twice.
tar -xzvf /Workspace/Software/icages-1.0.2/db.tar.gz
./db/
./db/cgc.gene
./db/drug.score
./db/hg19_example_db_generic.txt
./db/hg19_example_db_gff3.txt
./db/hg19_funseq2.txt
gzip: stdin: invalid compressed data--format violated
tar: Unexpected EOF in archive
tar: Unexpected EOF in archive
tar: Error is not recoverable: exiting now
How can I fit it? Thanks~
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kaichop commentedon Apr 20, 2017
baopinjie commentedon Feb 7, 2019
i face to same problem. how can I download database file? thanks.
kaichop commentedon Feb 9, 2019
coco90417 commentedon Feb 10, 2019
gongsj commentedon Mar 3, 2019
hi, I have a problem with the db.tar.gz. I cannot download the db.tar.gz database from URL http://icages.wglab.org/download/icages/db.tar.gz, given by the official website.
how can I download the db.tar.gz? Thanks!
kaichop commentedon Mar 4, 2019
you can read the comments above and download from those URL
gongsj commentedon Mar 5, 2019
Thanks for reply so timely! But I guess the URL you gave in the above comment is about the reference genome. When I run the ICAGES like this:
mypath-to-the-icages/icages.pl ./input.txt
......
NOTICE: start loading databases
NOTICE: start extracting suppressor genes
cannot open /thinker/globe/udata/big/gongshj/software/icages/db/suppressor.gene
ERROR: cannot call icagesMutation module
maybe I didn't download the db.tar.gz database which contains the information ICAGES needed.
where can I download it?Thanks!
kaichop commentedon Mar 5, 2019
coco90417 commentedon Mar 5, 2019
npavlovikj commentedon Jul 7, 2021
Dear,
I am trying to download the data files for icages, but both provided links
http://www.openbioinformatics.org/annovar/download/icages/hg18_db.tar.gzandhttp://icages.wglab.org/download/icages/db.tar.gzdo not work.Can you please provide me links I can use instead?
Thank you,
Natasha