Skip to content

Dicom Image Volume Rendering #678

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Closed
leyuan opened this issue Mar 30, 2018 · 14 comments
Closed

Dicom Image Volume Rendering #678

leyuan opened this issue Mar 30, 2018 · 14 comments

Comments

@leyuan
Copy link

leyuan commented Mar 30, 2018

Hi,

We are trying to get volume rendering work with DICOM vti image written from vtk writer in Python. Following the structure, we are running into troubles trying to getindex.json file correctly generated. So few questions here and appreciate if someone can help!

  • How does index.json generated for vti data
  • Is using vtkHttpDataSetReader the correct choice of reading the data? Or it should be XMLReader
  • Is there a better way of reading Dicom images(a folder of .dcm files) instead of using vti file

Thanks!

@jourdain
Copy link
Collaborator

To read a vti file you need to use that reader like here

The http reader use a different format which can be generated with that script.

But if you want to load DICOM, you should consider itk-js for loading your file natively and respect the orientation of the volume. @thewtex can tell you more about it.

Also you can see DICOM loading using itk-js and vtk-js here with ParaView Glance.

@thewtex
Copy link
Member

thewtex commented Apr 2, 2018

Yes, as @jourdain mentioned, we can load the DICOM images directly via itk.js.

To load a multi-frame DICOM file (the entire volume is in one file), use itk/readImageFile. To load a DICOM file series, use itk/readImageDICOMFileSeries. Both of these are enabled in this reference application.

@leyuan
Copy link
Author

leyuan commented Apr 4, 2018

Okay thanks!

@leyuan leyuan closed this as completed Apr 4, 2018
@rjsgml5698
Copy link

I want to render dicom files using itk.js. So, I want to use itk / dicomImageDICOMFileSeries.

However, I am a beginner who is not familiar with itk.js.

Is there a simple example I can refer to?

@rjsgml5698
Copy link

Thank you for your help!! I will try it!

@engrussman
Copy link

@thewtex I want to render the DICOM images but unable to use the following. would be grateful if you can give an independent example for beginners, please?

https://github.com/InsightSoftwareConsortium/itk-js/blob/680878359d89fa0e0e7b609cec494500762ec6af/test/Browser/DICOMSeriesTest.js#L22-L26

@thewtex
Copy link
Member

thewtex commented Jun 21, 2019

@engrussman here's an example:

https://glitch.com/~itk-read-dicom

@engrussman
Copy link

@thewtex Many thanks for your prompt response. The example is working fine for one or two slices when I select more than that, it gets stuck on "Loading... " status. Can you please rectify the issue, please.

@thewtex
Copy link
Member

thewtex commented Jun 21, 2019

@engrussman please share the data so the issue can be reproduced.

@engrussman
Copy link

@engrussman please share the data so the issue can be reproduced.

@thewtex Sorry that was my bad. There was some issue with the dataset, after fixing that issue, now it is reading all the dicom files. Thanks for your support. Is there any example which also performs rendering of DICOM file using VTK.js?

@thewtex
Copy link
Member

thewtex commented Jun 22, 2019

@engrussman good to hear :-)

A few applications with DICOM support using itk.js / vtk.js:

https://kitware.github.io/itk-vtk-viewer/
https://kitware.github.io/itk-vtk-viewer/app/

https://kitware.github.io/paraview-glance/index.html
https://kitware.github.io/paraview-glance/app/

@wcb2fwt
Copy link

wcb2fwt commented Sep 24, 2021

@thewtex Hello, when the number of DCM files exceeds 800, there will be an error, I want to know why? thank you~
image

@wcb2fwt
Copy link

wcb2fwt commented Sep 24, 2021

@thewtex When I delete the remaining 650 DCM files, it can be displayed normally. I need your help, thank you very much
image

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

6 participants