FLAIR (Full-Length Alternative Isoform analysis of RNA) for the correction, isoform definition, and alternative splicing analysis of noisy reads. FLAIR has primarily been used for nanopore cDNA, native RNA, and PacBio sequencing reads.

If you are using FLAIR, please subscribe to the FLAIR mailing list:

https://groups.google.com/a/ucsc.edu/g/flair-announce-group

This is a read-only, low volume list that will only have announcement of new FLAIR releases, publications and other FLAIR-related user information.

The complete Flair manual is available via readthedocs

If you use or discuss FLAIR, please cite the following paper:

Tang, A.D., Soulette, C.M., van Baren, M.J. et al. Full-length transcript characterization of SF3B1 mutation in chronic lymphocytic leukemia reveals downregulation of retained introns. Nat Commun 11, 1438 (2020). https://doi.org/10.1038/s41467-020-15171-6